For some reason I had a strange issue with theme and fonts settings not being applied to Root QT5 applications like mx-packageinstaller. After tinkering around a little, here is what made the trick.
User-level qt5ct was correctly set, so I eventually went to the terminal and:
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sudo -i env QT_QPA_PLATFORMTHEME=qt5ct qt5ct
Settings were all different, so I again changed style to gtk2, icons to Papirus and fonts to Ubuntu ones.
So far, these changes are sticking